Alessandro Lopes Da Silva Forex

2022

[16] Phylogenetic-based inference reveals singled-out transmission dynamics of SARS-CoV-2 lineages Gamma and P.2 in Brazil

Tiago Graf, Gonzalo Bello, Felipe Gomes Naveca, Marcelo Gomes, Vanessa Leiko Oikawa Cardoso, Alexandre Freitas da Silva, Filipe Zimmer Dezordi, Mirleide Cordeiro dos Santos, Katia Correa de Oliveira Santos, erika Lopes Rocha Batista, Alessandro Leonardo alvares Magalhaes, Fernando Vinhal, Brazilian Ministry of Health COVID-19 Genomic Surveillance Network*, Fabio Miyajima, Helisson Faoro, Ricardo Khouri, Gabriel Luz Wallau, Edson Delatorre, Marilda Mendonca Siqueira, Paola Cristina Resende
10.1101/2021.x.24.21265116v1 - medRxiv.
Contributions: Genomic data analysis.
10.1099/mgen.0.000751 - iScience.
iScience.

[15] Unusual SARS-CoV-2 intra-host diversity reveals lineages superinfection

Filipe Zimmer Dezordi, Paola Cristina Resende, Felipe Gomes Naveca, Valdinete Alves practice Nascimento, Victor Costa de Souza, Anna Carolina Dias Paixao, Luciana Appolinario, Renata Serrano Lopes, Ana Carolina da Fonseca Mendonca, Alice Sampaio Barreto da Rocha, Taina Moreira Martins Venas, Elisa Cavalcante Pereira, Richard Steiner Salvato, Tatiana Schaffer Gregianini, Leticia Garay Martins, Felicidade Mota Pereira, Darcita Buerger Rovaris, Sandra Bianchini Fernandes, Rodrigo Ribeiro-Rodrigues, Thais Oliveira Costa, Joaquim Cesar Sousa Jr., Fabio Miyajima, Edson Delatorre, Tiago Graf, Gonzalo Bello, Marilda Mendonca Siqueira, Gabriel Luz Wallau
10.1101/2021.09.xviii.21263755v1 - medRxiv.
10.1099/mgen.0.000751 - Microbial Genomics.
Contributions: Conceptualisation, methodology, formal analysis.
Microbial Genomics.

[14] ViralFlow: an automated workflow for SARS-CoV-2 genome assembly, lineage assignment, mutations and intrahost variants detection

Filipe Zimmer Dezordi, Antonio Marinho da Silva Neto, Túlio de Lima Campos, Pedro Miguel Carneiro Jeronimo, Cleber Furtado Aksenen, Suzana Porto Almeida, Gabriel Luz Wallau
10.1101/2021.x.01.21264424 - medRxiv.
10.3390/v14020217 - Viruses.
Contributions: Conceptualisation, workflow development, methodology, formal analysis.
Viruses.

2021

[xiii] Emergence and Spread of the SARS-CoV-ii Variant of Concern Delta Across Different Brazilian Regions

Ighor Arantes, Felipe Gomes Naveca, Tiago Gräf, Filipe Zimmer Dezordi on behalf of COVID-19 Fiocruz Genomic Surveillance Network, Fábio Miyajima, Helisson Faoro, Gabriel Luz Wallau, Edson Delatorre, Luciana Reis Appolinario, Elisa Cavalcante Pereira, Taina Moreira Martins Venas, Alice Sampaio Rocha, Renata Serrano Lopes, Marilda Mendonça Siqueira, Gonzalo Bello, Paola Cristina Resende
ten.1101/2021.xi.25.21266251v1 - medRxiv.
Contributions: Genomic information analysis.
medRxiv preprint.

[12] Identification of a Novel SARS-CoV-2 P.one Sub-Lineage in Brazil Provides New Insights About the Mechanisms of Emergence of Variants of Concern

Tiago Gräf, Gonzalo Bello, Taina Moreira Martins Venas, Elisa Cavalcante Pereira, Anna Carolina Dias Paixão, Luciana Reis Appolinario, Renata Serrano Lopes, Ana Carolina da Fonseca Mendonça, Alice Sampaio Barreto da Rocha, Fernando Couto Motta, Tatiana Schäffer Gregianini, Richard Steiner Salvato, Sandra Bianchini Fernandes, Darcita Buerger Rovaris, Andrea Cony Cavalcanti, Anderson Brandão Leite, Irina Riediger, Maria do Carmo Debur, André Felipe Leal Bernardes, Rodrigo Ribeiro-Rodrigues, Beatriz Grinsztejn, Valdinete Alves practise Nascimento, Victor Costa de Souza, Luciana Gonçalves, Cristiano Fernandes da Costa, Tirza Mattos, Filipe Zimmer Dezordi, Gabriel Luz Wallau, Felipe Gomes Naveca, Edson Delatorre, Marilda Mendonça Siqueira, Paola Cristina Resende
10.21203/rs.3.rs-580195/v1 - Enquiry Square.
10.1093/ve/veab091/6462077 - Virus Development.
Contributions: Genomic data assay.
Virus Development.

[11] The ongoing evolution of variants of concern and interest of SARS-CoV-2 in Brazil revealed by convergent indels in the amino (N)-terminal domain of the Spike poly peptide

Paola Cristina Resende, Felipe G Naveca, Roberto D. Lins, Filipe Zimmer Dezordi, Matheus 5. F. Ferraz, Emerson G. Moreira, Danilo F. Coêlho, Fernando Couto Motta, Anna Carolina Dias Paixão, Luciana Appolinario, Renata Serrano Lopes, Ana Carolina da Fonseca Mendonça, Alice Sampaio Barreto da Rocha, Valdinete Nascimento, Victor Souza, George Silva, Fernanda Nascimento, Lidio Gonçalves Lima Neto, Irina Riediger, Maria do Carmo Debur, Anderson Brandao Leite, Tirza Mattos, Cristiano Fernandes da Costa, Felicidade Mota Pereira, Ricardo Khouri, André Felipe Leal Bernardes, Edson Delatorre, Tiago Gräf, Marilda Mendonça Siqueira, Gonzalo Bello, Gabriel Fifty Wallau
doi.org/10.1093/ve/veab069 - Virus Evolution.
doi.org/10.1101/2021.03.xix.21253946 - medRxiv.
Contributions: Genomic data analysis.
Virus Evolution.

[10] COVID-19 in Amazonas, Brazil, was driven by the persistence of endemic lineages and P.1 emergence

Felipe Naveca, Valdinete Nascimento, Victor Souza, André Corado, Fernanda Nascimento, George Silva, Ágatha Costa, Débora Duarte, Karina Pessoa, Matilde Mejía, Maria Brandão, Michele Jesus, Luciana Gonçalves, Cristiano da Costa, Vanderson Sampaio, Daniel Barros, Marineide Silva, Tirza Mattos, Gemilson Pontes, Ligia Abdalla, João Santos, Ighor Arantes, Filipe Dezordi, Marilda Siqueira, Gabriel Wallau, Paola Resende, Edson Delatorre, Tiago Gräff, Gonzalo Bello
doi.org/x.1038/s41591-021-01378-7 - Nature Medicine.
www.researchsquare.com/article/rs-275494/v1 - Enquiry Square.
Contributions: Intrahost variant analysis.
Saiu na mídia.
Repository with scripts.
Nature Medicine.

[nine] Metatranscriptomic analysis identifies unlike viral-like sequences in two neotropical Mansoniini mosquito species

Alexandre Freitas da Silva, Filipe ZimmerDezordi, Laís Ceschini Machadoa, Rodrigo Dias de Oliveira, Si Qin, Hang Fan, Xianglilan Zhang, Yigang Tong, Monica Medeiros Silva, Elgion Lucio Silva Loreto, Gabriel Luz Wallau
doi.org/x.1016/j.virusres.2021.198455 - Virus Research.
Contributions: Mosquito drove, information analysis, EVEs filter.
Virus Research

[viii] Lying in look: the resurgence of dengue virus after the Zika epidemic in Brazil

Anderson Fernandes Brito, Lais Ceschini Machado, Marcio Junio Lima Siconelli, Rachel J. Oidtman, Joseph R. Fauver, Rodrigo Dias de Oliveira Carvalho, Filipe Zimmer Dezordi, Mylena Ribeiro Pereira, Luiza Antunes de Castro-Jorge, Elaine Cristina Manini Minto, Luzia Marcia Romanholi Passos, Chaney C. Kalinich, Mary Due east. Petrone, Emma Allen, Guido Camargo Espana, Angkana T. Huang, Derek A.T. Cummings, Guy Baele, Rafael Freitas Oliveira Franca, T. Alex Perkins, Benedito Antonio Lopes da Fonseca, Gabriel Luz Wallau, Nathan D Grubaugh
doi.org/ten.1038/s41467-021-22921-7 - Nature Communications.
doi.org/ten.1101/2020.08.10.20172247 - medRxiv.
Contributions: DENV1 genomes curation to submission; DENV1 genomes submission to NCBI; Epidemiological data collection and information treatment.
Saiu na mídia.
Nat. Commun., v12, 2619.

[seven] Systematic Review of Wolbachia Symbiont Detection in Mosquitoes: An Entangled Topic about Methodological Ability and True Symbiosis

Luísa Maria Inácio da Silva, Filipe Zimmer Dezordi , Marcelo Henrique Santos Paiva* and Gabriel Luz Wallau*
doi.org/10.3390/pathogens10010039 - Pathogens.
Contributions: Secondary information review; data analysis; figures design.
Pathogens. Volume 10, p. 39.

2020

[6] Multiple introductions followed by ongoing community spread of SARS-CoV-2 at one of the largest metropolitan areas in the Northeast of Brazil

Marcelo Henrique Santos Paiva*, Duschinka Ribeiro Duarte Guedes*, Cassia Docena*, Matheus Filgueira Bezerra*, Filipe Zimmer Dezordi*, Lais Ceschini Machado, Larissa Krokovsky, Elisama Helvecio, Alexandre Freitas da Silva, Luydson Richardson Silva Vasconcelos, Antonio Mauro Rezende, Severino Jefferson Ribeiro da Silva, Kamila Gaudencio da Silva Sales, Bruna Santos Lima Figueiredo de Sa, Derciliano Lopes da Cruz, Claudio Eduardo Cavalcanti, Armando de Menezes Neto, Caroline Targino Alves da Silva, Renata Pessoa Germano Mendes, Maria Almerice Lopes da Silva, Michelle da Silva Barros, Wheverton Ricardo Correia practice Nascimento, Rodrigo Moraes Loyo Arcoverde, Luciane Caroline Albuquerque Bezerra, Sinval Pinto Brandao Filho, Constancia Flavia Junqueira Ayres,Gabriel Luz Wallau**
doi.org/x.1101/2020.08.25.20171595 - medRxiv
doi.org/x.3390/v12121414 - Viruses
Contributions: Writing in business firm scripts for datasets treatments, karyoploter analysis, phylogeny past maximum likelihood analysis, spike mutation assay.
Repository with scripts.
Viruses v12, 1414.

[5] In and outs of Chuviridae endogenous viral elements: origin of a potentially new retrovirus and signature of aboriginal and ongoing artillery race in mosquito genomes

DEZORDI, F. Z.; VASCONCELOS, C. R. Southward.; REZENDE, A. G.; WALLAU G. L.
doi.org/10.1101/2020.02.15.950899 - bioRxiv.
doi.org/10.3389/fgene.2020.542437 - Front. Gen.
Texto de divulgação em Português!
Contributions: Experimental blueprint, all bioinformatics analysis (except molecular modeling), pictures pattern.
Frontiers in Genetics. Volume 11, p. 1291.

2018

[4] De novo Assembly and Note of the Antarctic Alga Prasiola crispa Transcriptome

CARVALHO, E. L.; MACIEL, L. F.; MACEDO, P. E. ; DEZORDI, F. Z.; ABREU, M. E. T.; VICTÓRIA, F. C.; PEREIRA, A. B.; BOLDO, J. T.; WALLAU, G. L.; PINTO, P. M.
doi.org/10.3389/fmolb.2017.00089
Contributions: Preliminary information assay.
Frontiers in Molecular Biosciences. Volume 4, p. 1-v.

[3] HTT-DB: new features and updates

DOTTO, B. R.; CARVALHO, E. L.; SILVA, A. F.; DEZORDI, F. Z.; PINTO, P. G.; CAMPOS, T. L.; REZENDE, A. M.; WALLAU, G. L.
doi.org/10.1093/database/bax102
Contributions: Manual information curation.
Database. Volume 2018, p. 1-v.

[2] Drosophila parasitoid wasps bears a distinct DNA transposon profile

SILVA, A. F.; DEZORDI, F. Z.; LORETO, E. Fifty. S.; WALLAU, G. L.
doi.org/ten.1186/s13100-018-0127-ii
Contributions: Bioinformatics analysis, pictures pattern.
Mobile Deoxyribonucleic acid. Volume eight. Commodity 23, p. 23-36.

2017

[1] RPGBIO Drogadição: O jogo Office Playing Game (RPG) como prática no processo de ensino e aprendizagem.

ROSA, L. Z.; ALEMEIDA, C. G. Thou.; DEZORDI, F. Z.
doi.org/ten.26843/rencima.v8i1.1108
Contributions: Graphic and game design.
Revista de Ensino Ciências e Matemática. Volume viii, p. 166-181.

Curt Courses

Evo101

Rscripts

Repository with Rscripts to plot biological information.

At the moment:

• frequency.R - Generate stacked barplot of intrahost allele variants;

For more than information, Click Hither!

Contact me

Contact Info

Fundação Oswaldo Cruz/IAM
Av. Prof. Moraes Rego S/Northward
Cidade Universitária
Recife, PE

filipe.zimmer@fiocruz.br

Source: https://dezordi.github.io/

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